Results for 'Musen Mark'

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  1. The National Center for Biomedical Ontology.Mark A. Musen, Natalya F. Noy, Nigam H. Shah, Patricia L. Whetzel, Christopher G. Chute, Margaret-Anne Story & Barry Smith - 2012 - Journal of the American Medical Informatics Association 19 (2):190-195.
    The National Center for Biomedical Ontology is now in its seventh year. The goals of this National Center for Biomedical Computing are to: create and maintain a repository of biomedical ontologies and terminologies; build tools and web services to enable the use of ontologies and terminologies in clinical and translational research; educate their trainees and the scientific community broadly about biomedical ontology and ontology-based technology and best practices; and collaborate with a variety of groups who develop and use ontologies and (...)
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  2. Towards Interoperability of Biomedical Ontologies - Report Number 07132.Mark Musen, Michael Schroeder & Barry Smith - 2008 - In Musen Mark, A. Schroeder, Michael Smith & Barry, Towards Interoperability of Biomedical Ontologies. Schloss Dagstuhl: Leibniz-Zentrum für Informatik.
    The meeting focused on uses of ontologies, with a special focus on spatial ontologies, in addressing the ever increasing needs faced by biology and medicine to cope with ever expanding quantities of data. To provide effective solutions computers need to integrate data deriving from myriad heterogeneous sources by bringing the data together within a single framework. The meeting brought together leaders in the field of what are called "top-level ontologies" to address this issue, and to establish strategies among leaders in (...)
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  3.  89
    Applied ontology: The next decade begins.Nicola Guarino & Mark Musen - 2015 - Applied ontology 10 (1):1-4.
    In 2005, IOS Press published the first issue of applied Ontology. At the time, we argued that, at the core of the journal, there was “a desire to understand the nature of reality and how people construe their world”. We declared that ontology was both “fundamental to human thought” and “to translating our thoughts into computational artifacts” (Guarino & Musen,2005). With an editorial board of distinguished scholars representing the fields of computer science, informatics, information science, philosophy, linguistics, psychology, and (...)
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  4. Applied Ontology: Focusing on content.Nicola Guarino & Mark A. Musen - 2005 - Applied ontology 1 (1):1-5.
    In a world that is overflowing with journals and other outlets for scientific publication, the appearance of any new periodical requires some justification. There are already more journals than we can read and more conferences than we can attend. In the case of applied Ontology, we believe that the creation of anew journal not only is completely justifiable, it is downright exciting. For too long, workers in computer science have assumed that content comes for free. “Theory” in computer science has (...)
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  5. Ontology Summit 2008 Communiqué: Towards an open ontology repository.Leo Obrst, Mark Musen, Barry Smith, Fabian Neuhaus, Frank Olken, Mike Gruninger, M. Raymond, Patrick Hayes & Raj Sharma - 2008 - In Leo Obrst, Mark Musen, Barry Smith, Fabian Neuhaus, Frank Olken, Mike Gruninger, M. Raymond, Patrick Hayes & Raj Sharma, Ontology Summit 2008 Communiqué: Towards an open ontology repository. cim3. net.
    Each annual Ontology Summit initiative makes a statement appropriate to each Summit’s theme as part of our general advocacy designed to bring ontology science and engineering into the mainstream. The theme this year is "Towards an Open Ontology Repository". This communiqué represents the joint position of those who were engaged in the year's summit discourse on an Open Ontology Repository (OOR) and of those who endorse below. In this discussion, we have agreed that an "ontology repository is a facility where (...)
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  6. ARGOS policy brief on semantic interoperability.Dipak Kalra, Mark Musen, Barry Smith & Werner Ceusters - 2011 - Studies in Health Technology and Informatics 170 (1):1-15.
    Semantic interoperability requires the use of standards, not only for Electronic Health Record (EHR) data to be transferred and structurally mapped into a receiving repository, but also for the clinical content of the EHR to be interpreted in conformity with the original meanings intended by its authors. Accurate and complete clinical documentation, faithful to the patient’s situation, and interoperability between systems, require widespread and dependable access to published and maintained collections of coherent and quality-assured semantic resources, including models such as (...)
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  7. Ten years of Applied Ontology.Nicola Guarino & Mark A. Musen - 2015 - Applied ontology 10 (3-4):169-170.
    This is a short editorial to introduce the double issue of Applied Ontology that celebrates the journal's tenth anniversary. At a time when information technology of all kinds depends on the use of explicit ontologies, our journal addresses the modeling issues that underlie the next generation of computational systems. As the editors of Applied Ontology, we are excited by how far we have come in the past decade and by the opportunities that await our research community.
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  8. National Center for Biomedical Ontology: Advancing biomedicine through structured organization of scientific knowledge.Daniel L. Rubin, Suzanna E. Lewis, Chris J. Mungall, Misra Sima, Westerfield Monte, Ashburner Michael, Christopher G. Chute, Ida Sim, Harold Solbrig, M. A. Storey, Barry Smith, John D. Richter, Natasha Noy & Mark A. Musen - 2006 - Omics: A Journal of Integrative Biology 10 (2):185-198.
    The National Center for Biomedical Ontology is a consortium that comprises leading informaticians, biologists, clinicians, and ontologists, funded by the National Institutes of Health (NIH) Roadmap, to develop innovative technology and methods that allow scientists to record, manage, and disseminate biomedical information and knowledge in machine-processable form. The goals of the Center are (1) to help unify the divergent and isolated efforts in ontology development by promoting high quality open-source, standards-based tools to create, manage, and use ontologies, (2) to create (...)
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  9. Bioportal: Ontologies and integrated data resources at the click of the mouse.L. Whetzel Patricia, H. Shah Nigam, F. Noy Natalya, Dai Benjamin, Dorf Michael, Griffith Nicholas, Jonquet Clement, Youn Cherie, Callendar Chris, Coulet Adrien, Barry Smith, Chris Chute & Mark Musen - 2011 - In Whetzel Patricia L., Shah Nigam H., Noy Natalya F., Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Cherie Youn, Chris Callendar, Adrien Coulet, Smith Barry, Chute Chris & Musen Mark, Proceedings of the 2nd International Conference on Biomedical Ontology, Buffalo, NY. pp. 292-293.
    BioPortal is a Web portal that provides access to a library of biomedical ontologies and terminologies developed in OWL, RDF(S), OBO format, Protégé frames, and Rich Release Format. BioPortal functionality, driven by a service-oriented architecture, includes the ability to browse, search and visualize ontologies (Figure 1). The Web interface also facilitates community-based participation in the evaluation and evolution of ontology content.
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  10.  13
    Task modeling with reusable problem-solving methods.Henrik Eriksson, Yuval Shahar, Samson W. Tu, Angel R. Puerta & Mark A. Musen - 1995 - Artificial Intelligence 79 (2):293-326.
  11.  41
    Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages.Natalya F. Noy, Sherri de Coronado, Harold Solbrig, Gilberto Fragoso, Frank W. Hartel & Mark A. Musen - 2008 - Applied ontology 3 (3):173-190.
    The National Cancer Institute's (NCI) Thesaurus is a biomedical reference ontology. The NCI Thesaurus is represented using description logic, more specifically Ontylog, a description logic implemen...
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  12. Towards Interoperability of Biomedical Ontologies.Musen Mark, A. Schroeder, Michael Smith & Barry - 2008 - Schloss Dagstuhl: Leibniz-Zentrum für Informatik.
    Report on Dagstuhl Seminar 07132, Schloss Dagstuhl, March 27-30 , 2007.
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  13. Implicit and explicit memory for novel visual-patterns.G. Musen - 1989 - Bulletin of the Psychonomic Society 27 (6):504-504.
  14.  16
    Is memory like understanding?Gail Musen - 1997 - Behavioral and Brain Sciences 20 (1):31-32.
    There are three major weaknesses with Glenberg 's theory. The first is that his theory makes assumptions about internal representations that cannot be adequately tested. The second is that he tries to accommodate data from three disparate domains: mental models, linguistics, and memory. The third is that he makes light of advances in cognitive neuroscience.
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  15. The Puzzle of Change.Mark Hinchliff - 1996 - Philosophical Perspectives 10:119-136.
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  16. Hylomorphism.Mark Johnston - 2006 - Journal of Philosophy 103 (12):652-698.
  17. (1 other version)Constitution is not identity.Mark Johnston - 1992 - Mind 101 (401):89-106.
  18. Causation, Norm violation, and culpable control.Mark D. Alicke, David Rose & Dori Bloom - 2011 - Journal of Philosophy 108 (12):670-696.
    Causation is one of philosophy's most venerable and thoroughly-analyzed concepts. However, the study of how ordinary people make causal judgments is a much more recent addition to the philosophical arsenal. One of the most prominent views of causal explanation, especially in the realm of harmful or potentially harmful behavior, is that unusual or counternormative events are accorded privileged status in ordinary causal explanations. This is a fundamental assumption in psychological theories of counterfactual reasoning, and has been transported to philosophy by (...)
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  19. The authority of affect.Mark Johnston - 2001 - Philosophy and Phenomenological Research 63 (1):181-214.
    A while ago I pulled the short straw, and became chair of my department. One nice part of the job is to praise people I work with, which I can do sincerely because they are very praiseworthy. I also have to read a lot of praise by others; the familiar things—project evaluations, letters of recommendation, promotion dossiers, and so on and so forth. As a result, I have learnt to attend to praise a little more closely.
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  20. Getting Perspective on Objective Reasons.Mark Schroeder - 2018 - Ethics 128 (2):289-319.
    This article considers two important problems for the idea that what we ought to do is determined by the balance of competing reasons. The problems are distinct, but the object of the article is to explore how they admit of a single solution. It is a consequence of this solution that objective reasons—facts that count in favor—are in an important sense less objective than they have consistently been assumed to be. This raises but does not answer the question as to (...)
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  21. (3 other versions)Better Than Mere Knowledge? The Function of Sensory Awareness.Mark Johnston - 2006 - In Tamar Szabo Gendler & John Hawthorne, Perceptual experience. New York: Oxford University Press. pp. 260--290.
  22. Color pluralism.Mark Eli Kalderon - 2007 - Philosophical Review 116 (4):563-601.
    Colors are sensible qualities. They are qualities that objects are perceived to have. Thus, when Norm, a normal perceiver, perceives a blue bead, the bead is perceived have a certain quality, perceived blueness. `Quality', here, is no mere synonym for property; rather, a quality is a kind of property a qualitative, as opposed to quan• titative, property. (The quantitative is a way of contrasting with the qualitative perhaps not the only way.).
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  23. Knowing how things might have been.Mark Jago - 2018 - Synthese 198 (S8):1981-1999.
    I know that I could have been where you are right now and that you could have been where I am right now, but that neither of us could have been turnips or natural numbers. This knowledge of metaphysical modality stands in need of explanation. I will offer an account based on our knowledge of the natures, or essencess, of things. I will argue that essences need not be viewed as metaphysically bizarre entities; that we can conceptualise and refer to (...)
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  24. Exploratory hypothesis tests can be more compelling than confirmatory hypothesis tests.Mark Rubin & Chris Donkin - 2024 - Philosophical Psychology 37 (8):2019-2047.
    Preregistration has been proposed as a useful method for making a publicly verifiable distinction between confirmatory hypothesis tests, which involve planned tests of ante hoc hypotheses, and exploratory hypothesis tests, which involve unplanned tests of post hoc hypotheses. This distinction is thought to be important because it has been proposed that confirmatory hypothesis tests provide more compelling results (less uncertain, less tentative, less open to bias) than exploratory hypothesis tests. In this article, we challenge this proposition and argue that there (...)
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  25. Blaming Badly.Mark Alicke - 2008 - Journal of Cognition and Culture 8 (1-2):179-186.
    Moral philosophers, legal theorists, and psychologists who study moral judgment are remarkably agreed in prescribing how to blame people. A blameworthy act occurs when an actor intentionally, negligently or recklessly causes foreseen, or foreseeable, harmful consequences without any compelling mitigating or extenuating circumstances. This simple formulation conveniently forestalls intricacies about how to construe concepts such as will, causation, foresight, and mitigation, but putting that aside for the moment, it seems fair to say that blame “professionals” share compatible conceptions of how (...)
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  26. Talk about Beliefs.Mark Crimmins - 1995 - Studia Logica 54 (3):420-421.
     
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  27.  48
    Three Kinds of Decision-Making Capacity for Refusing Medical Interventions.Mark Christopher Navin, Abram L. Brummett & Jason Adam Wasserman - 2021 - American Journal of Bioethics 22 (11):73-83.
    According to a standard account of patient decision-making capacity, patients can provide ethically valid consent or refusal only if they are able to understand and appreciate their medical c...
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  28. It's not what you know that counts.Mark Kaplan - 1985 - Journal of Philosophy 82 (7):350-363.
  29. A defense of presentism in a relativistic setting.Mark Hinchliff - 2000 - Philosophy of Science 67 (3):586.
    Presentism is the view, roughly speaking, that only presently existing things exist. Though presentism offers many attractive solutions to problems in metaphysics, philosophy of language, and philosophy of mind, it faces threats from two main sources: McTaggart and the special theory of relativity. This paper explores the prospects for fitting presentism together with the special theory. Two models are proposed, one which fits presentism into a relativistic setting (the cone model) and one which fits the special theory into a presentistic (...)
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  30. The grammar of meaning: normativity and semantic discourse.Mark Norris Lance - 1997 - New York, NY: Cambridge University Press. Edited by John Hawthorne.
    What is the function of concepts pertaining to meaning in socio-linguistic practice? In this study, the authors argue that we can approach a satisfactory answer by displacing the standard picture of meaning talk as a sort of description with a picture that takes seriously the similarity between meaning talk and various types of normative injunction. In their discussion of this approach, they investigate the more general question of the nature of the normative, as well as a range of important topics (...)
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  31. When to adjust alpha during multiple testing: a consideration of disjunction, conjunction, and individual testing.Mark Rubin - 2021 - Synthese 199 (3-4):10969-11000.
    Scientists often adjust their significance threshold during null hypothesis significance testing in order to take into account multiple testing and multiple comparisons. This alpha adjustment has become particularly relevant in the context of the replication crisis in science. The present article considers the conditions in which this alpha adjustment is appropriate and the conditions in which it is inappropriate. A distinction is drawn between three types of multiple testing: disjunction testing, conjunction testing, and individual testing. It is argued that alpha (...)
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  32. Externalism: Putting Mind and World Back Together Again.Mark Rowlands - 2006 - Philosophy and Phenomenological Research 72 (2):487-490.
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  33. Vagueness and Truth.Mark Colyvan - 2008 - In Heather Dyke, From Truth to Reality: New Essays in Logic and Metaphysics. New York: Routledge. pp. 29–40..
    In philosophy of logic and elsewhere, it is generally thought that similar problems should be solved by similar means. This advice is sometimes elevated to the status of a principle: the principle of uniform solution. In this paper I will explore the question of what counts as a similar problem and consider reasons for subscribing to the principle of uniform solution.
     
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  34. Manifest kinds.Mark Johnston - 1997 - Journal of Philosophy 94 (11):564-583.
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  35. A bayesian theory of rational acceptance.Mark Kaplan - 1981 - Journal of Philosophy 78 (6):305-330.
  36. The simple desire-fulfillment theory.Mark C. Murphy - 1999 - Noûs 33 (2):247-272.
    It seems to be a widely shared view that any defensible desire-fulfillment theory of welfare must be framed not in terms of what an agent, in fact, desires but rather in terms of what an agent would desire under hypothetical conditions that include improved information. Unfortunately, though, such accounts are subject to serious criticisms. In this paper I show that in the face of these criticisms the best response is to jettison any appeal to idealized information conditions: the considerations put (...)
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  37. Hintikka and Cresswell on Logical Omniscience.Mark Jago - 2006 - Logic and Logical Philosophy 15 (3):325-354.
    I discuss three ways of responding to the logical omniscience problems faced by traditional ‘possible worlds’ epistemic logics. Two of these responses were put forward by Hintikka and the third by Cresswell; all three have been influential in the literature on epistemic logic. I show that both of Hintikka's responses fail and present some problems for Cresswell’s. Although Cresswell's approach can be amended to avoid certain unpalatable consequences, the resulting formal framework collapses to a sentential model of knowledge, which defenders (...)
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  38. “Repeated sampling from the same population?” A critique of Neyman and Pearson’s responses to Fisher.Mark Rubin - 2020 - European Journal for Philosophy of Science 10 (3):1-15.
    Fisher criticised the Neyman-Pearson approach to hypothesis testing by arguing that it relies on the assumption of “repeated sampling from the same population.” The present article considers the responses to this criticism provided by Pearson and Neyman. Pearson interpreted alpha levels in relation to imaginary replications of the original test. This interpretation is appropriate when test users are sure that their replications will be equivalent to one another. However, by definition, scientific researchers do not possess sufficient knowledge about the relevant (...)
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  39. Rigid/non-rigid grounding and transitivity.Mark Makin - 2019 - Inquiry: An Interdisciplinary Journal of Philosophy 62 (2):136-150.
    ABSTRACTWhile extant replies to Jonathan Schaffer’s putative counterexamples to the transitivity of grounding have made significant strides against the charge of transitivity failure, the replies pay insufficient attention to the common structure of the counterexamples, overlooking a deeper structural feature that contributes to their prima facie plausibility. Putative counterexamples to the transitivity of grounding, I argue, trade on the distinction between what I call ‘rigid’ and ‘non-rigid’ grounding, and confusion over how rigid and non-rigid grounding react when combined pumps the (...)
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  40.  48
    Political Realism, Feasibility Wedges, and Opportunities for Collective Action on Climate Change.Mark Budolfson - 2021 - In Budolfson Mark, McPherson Tristram & Plunkett David, Philosophy and Climate Change. Oxford University Press. pp. 323-345.
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  41. Philosophical issues in ecology: Recent trends and future directions.Mark Colyvan, William Grey, Paul E. Griffiths, Jay Odenbaugh, Stefan Linquist & Hugh P. Possingham - 2009 - Ecology and Society 14 (2).
    Philosophy of ecology has been slow to become established as an area of philosophical interest, but it is now receiving considerable attention. This area holds great promise for the advancement of both ecology and the philosophy of science. Insights from the philosophy of science can advance ecology in a number of ways. For example, philosophy can assist with the development of improved models of ecological hypothesis testing and theory choice. Philosophy can also help ecologists understand the role and limitations of (...)
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  42. Can Machines Create Art?Mark Coeckelbergh - 2016 - Philosophy and Technology 30 (3):285-303.
    As machines take over more tasks previously done by humans, artistic creation is also considered as a candidate to be automated. But, can machines create art? This paper offers a conceptual framework for a philosophical discussion of this question regarding the status of machine art and machine creativity. It breaks the main question down in three sub-questions, and then analyses each question in order to arrive at more precise problems with regard to machine art and machine creativity: What is art (...)
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  43. Setting the Facts Straight.Mark Jago - 2011 - Journal of Philosophical Logic 40 (1):33-54.
    Substantial facts are not well-understood entities. Many philosophers object to their existence on this basis. Yet facts, if they can be understood, promise to do a lot of philosophical work: they can be used to construct theories of property possession and truthmaking, for example. Here, I give a formal theory of facts, including negative and logically complex facts. I provide a theory of reduction similar to that of the typed λ -calculus and use it to provide identity conditions for facts. (...)
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  44. Virtue ethics and deontic constraints.Mark LeBar - 2009 - Ethics 119 (4):642-671.
    One important objection to virtue ethical theories is that they apparently must account for the wrongness of a wrong action in terms of a lack of virtue (or presence of vice) in the agent, and not in terms of the effects of the action on its victim. We take such effects to ground deontic constraints on how we may act, and virtue theory appears unable to account for such constraints. I claim, however, that eudaimonist virtue theory can account for wrongness (...)
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  45. The limits of practical possibility.Mark Jensen - 2009 - Journal of Political Philosophy 17 (2):168-184.
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  46. Introduction.Mark Siderits, Evan Thompson & Dan Zahavi - 2011 - In Mark Siderits, Evan Thompson & Dan Zahavi, Self, no self?: perspectives from analytical, phenomenological, and Indian traditions. Oxford: Oxford University Press.
     
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  47.  72
    How do Small and Medium Enterprises Go “Green”? A Study of Environmental Management Programs in the U.S. Wine Industry.Mark Cordano, R. Scott Marshall & Murray Silverman - 2010 - Journal of Business Ethics 92 (3):463-478.
    In industries populated by small and medium enterprises, managers' good intentions frequently incur barriers to superior environmental performance (Tilley, Bus Strategy Environ 8:238-248, 1999). During the period when the U.S. wine industry was beginning to promote voluntary adoption of sound environmental practices, we examined managers' attitudes, norms, and perceptions of stakeholder pressures to assess their intentions to implement environmental management programs (EMP). We found that managers within the simple structures of these small and medium firms are responsive to attitudes, norms, (...)
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  48. Truth in Fiction, Underdetermination, and the Experience of Actuality.Mark Bowker - 2021 - British Journal of Aesthetics 61 (4):437-454.
    It seems true to say that Sherlock Holmes is a detective, despite there being no Sherlock Holmes. When asked to explain this fact, philosophers of language often opt for some version of Lewis’s view that sentences like ‘Sherlock Holmes is a detective’ may be taken as abbreviations for sentences prefixed with ‘In the Sherlock Holmes stories …’. I present two problems for this view. First, I provide reason to deny that these sentences are abbreviations. In short, these sentences have aesthetic (...)
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  49. Why You'll Regret Not Reading This Paper.Mark Schroeder - 2019 - Royal Institute of Philosophy Supplement 85:135-156.
    In this paper, I explore the role for anticipated regret in major life decision-making, focusing on how it is employed by realistic decision-makers in a variety of realistic cases. I argue that the most obvious answers to how regret might matter in decision do not make these cases intelligible, but that we can make them intelligible through consideration of the significance of narrative in our own self-understanding.
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  50. Which Fitch?Mark Jago - 2021 - Analysis 81 (3):436-439.
    Jago uses a Fitch-style argument in an attempt to demonstrate that every truth has a truthmaker. But Trueman shows that there is a parallel argument, this time to the conclusion that no truth has a truthmaker. Since we cannot accept both, we must ditch at least one Fitch. But which? Keywords: Truth, truthmaking, truthmaker maximalism, Fitch paradox, Robert Trueman.
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