The history of developmental biology is interwoven with debates as to whether mechanistic explanations of development are possible or whether alternative explanatory principles or even vital forces need to be assumed. In particular, the demonstrated ability of embryonic cells to tune their developmental fate precisely to their relative position and the overall size of the embryo was once thought to be inexplicable in mechanistic terms. Taking a causal perspective, this Element examines to what extent and how developmental biology, having turned (...) molecular about four decades ago, has been able to meet the vitalist challenge. It focuses not only on the nature of explanations but also on the usefulness of causal knowledge – including the knowledge of classical experimental embryology – for further scientific discovery. It also shows how this causal perspective allows us to understand the nature and significance of some key concepts, including organizer, signal and morphogen. This title is also available as Open Access on Cambridge Core. (shrink)

With historical hindsight, it can be little questioned that the view of protozoa as unicellular organisms was important for the development of the discipline of protozoology. In the early years of this century, the assumption of unicellularity provided a sound justification for the study of protists: it linked them to the metazoa and supported the claim that the study of these “simple” unicellular organisms could shed light on the organization of the metazoan cell. This prospect was significant, given the state (...) of cytology circa 1910. In the wake of the major gains made in understanding nuclear division in the last two decades of the nineteenth century, cytology was suddenly confronted with many, seemingly less penetrable, problems. Several aspects of nuclear organization still remained unexplained, and recent research had revealed the presence in the cytoplasm of structures whose functions in cell life were unknown. Classical methods of cytology, relying on descriptive, morphological analysis, seemed ill equipped to resolve these questions.Hertwig's program for protozoology, grounded in the assumption of the fundamental unity of organization in protozoa and metazoa, offered a potential means for investigating these and other problems of cell theory. Linked to mainstream cytology, protozoology was advocated as a means of experimentally investigating key biolobical processes — reproduction, metabolism, and organelle morphology and physiology — less accessible in higher organisms. Protozoa were hailed as prime experimental organisms, in which cell structure and function could be more easily studied. Unlike the metazoan cell, they could be subjected to controlled experiments in which the external environment was modified and the effects monitored. Protozoa offered, in other words, a promising experimental means by which to investigate the cell — its structures and its processes.The success of this program within Germany was soon apparent. In contrast to the rather neglected state of the discipline in 1900, protozoology began to be recognized as more than a somewhat obscure area of study for specialists. In practical terms, this translated into greater numbers of students attracted to the field, increased institutional support for the discipline, and its elevation in status within the biological sciences as new developments, particularly in connection with medical applications, began to draw attention to the field.64The unicellular hypothesis also promoted the internal development of the science. It provided a rationale for introducing the various techniques used in cytology, embryology, physiology, and the new field of biochemistry as suitable research tools for protozoology as well. This vastly extended the research possibilities and facilitated the understanding of, among other things, protozoan organization, modes of reproduction, and evolutionary relationships. The new experimental grounding of the discipline in turn fitted in well with developments in biology at large: in contrast to the descriptive methodology that had predominated in the nineteenth century, this new experimental program placed protozoology at the forefront of the early twentieth-century movement to make biology an experimental science comparable to physics and chemistry.Yet the criticism of the unicellular hypothesis can also be seen as having served a valuable function within the development of the discipline. It focused attention on the study of protists as organisms in their own right, not simply as models for metazoan cells. More generally, it helped to remind biologists of the particular evolutionary assumptions that supported this conception. Dobell and other British critics pointed out, among other things, the association between the theory of recapitulation and the interpretation of protozoa as unicellular organisms. At the time when the recapitulation theory and the germ-layer doctrine were in decline, it was important to stress how these evolutionary ideas also entered into the contemporary concepts of subsidiary specialties. This was as true for protozoology as it was for cell theory itself. The chromidial theory, in its various guises, and the binuclearity hypothesis did in fact contain elements of recapitulationist reasoning, and they were open to criticism for the same kind of overly speculative theorizing that characterized this evolution theory. Dobell's critique forced protozoologists and cell theorists alike to review the theoretical postulates guiding their investigations.In the absence of further historical studies, it is hard to evaluate the consequences of this debate in later years. The issue was not whether protozoa were the precursors of metazoa — both sides accepted this. They disagreed over which particular protozoon had served as the ancestral form, and this, in turn, influenced their stance on the question of unicellularity. The situation is little changed today. Because the former question is still an open one, the latter remains so too. Both of the models for the origin of multicellular organisms — colonies of ciliates versus multinucleate protists — are still presented as possible mechanisms in modern textbooks of evolution. Unable to judge the dispute in terms of the ultimate validity of the competing conceptions, the historian requires other criteria. It perhaps becomes more important to evaluate the issues in the context of the internal and external stimulus they provided the discipline.65 In these terms, and from the present historical vantage point, Hertwig's research program for protozoology, based upon the unicellular hypothesis, appears to have been a successful one. (shrink)

Mary Shelley's Frankenstein celebrates its 200th anniversary this year, and it is arguably more relevant than ever. In his preface to the 1992 edition of Shelley's classic work, Maurice Hindle notes that the novel, subtitled The Modern Prometheus, blends two mythical narratives, that of Prometheus as the Titan provocateur who stole fire from Zeus and gave it to humankind for their survival, and that of Prometheus as a "plasticator, a figure who creates and manipulates men into life". Both story lines (...) are directly relevant to the modern practice of biological research, especially to embryology and to germ-line experimentation.Shelley conceived Frankenstein in Switzerland, having been... (shrink)

In lieu of an abstract, here is a brief excerpt of the content:Preface: Virtual Entities in ScienceRobert Harlander, Jean-Philippe Martinez, Friedrich Steinle, and Adrian WüthrichIt is not only since the sudden increase of online communication due to the COVID-19 situation that the concept of the “virtual” has made its way into everyday language. In this context, it mostly denotes a digital substitute for a real object or process. Virtual reality is perhaps the best-known term in this respect. With these digital (...) connotations, “virtuality” has also been used in science and research: Chemists use virtual laboratories, biologists do virtual scanning of molecular structures, and geologists engage in virtual field trips. But the concept of the virtual has a much longer tradition, dating back to long before the dawn of the digital age. Virtual images and virtual displacements were introduced in classical physics already in the late seventeenth and eighteenth centuries, respectively. They represent auxiliary objects or processes without instantiation, with the purpose of efficiently describing specific physical systems. In today’s physics, the term “virtual” is mostly associated with the quantum world, first and foremost with the “virtual particle” of quantum field theory. It has become such an integral part of modern high energy physics that its ontological character may be considered to go beyond the purely auxiliary, which is typically associated with the virtual. [End Page 263]In other disciplines, however, use of the term virtual without a digital connotation is much rarer. While concepts like “virtual adrenaline” show up in physiological research around 1940s, and Charles Darwin, in a private note in January 1840,1 spoke of “virtual change” in the context of embryology, these examples seem to be singular occurrences of entities that were explicitly called “virtual.” The basic idea behind the terminology of the virtual, however, might be much more common, even outside of physics. The “invisible hand” in economics, or the “vital force” in biology, for instance, may carry aspects of a virtual entity, even if they have not been referred to that way.These different observations raise several questions about the status of virtual entities in science. What has led scientists to call one entity “virtual” and not another? Do all virtual entities in science have the same roots and meet the same characteristics? Are they more than auxiliary objects or processes? Why does physics seem to occupy a specific position with respect to the use of the notion of virtuality? These are some points that led us to discuss virtual entities in science during a workshop, out of which grew the present collection. We invited contributions that addressed the historical formation and philosophical interpretation of concepts of virtual entities in physics and other disciplines—in whatever terms they may come. The main goal of the workshop was to bring to the fore similarities and differences in the meanings and functions of these concepts, so as to be able to precisely characterize why certain entities are considered virtual in specific contexts, why a different terminology was often used in each individual case, and in what sense the virtual entities relate to the real world.The organization of the workshop was part of our project “The formation and development of the concept of virtual particles,” a subproject of the Research Unit “The Epistemology of the Large Hadron Collider,” funded by the Deutsche Forschungsgemeinschaft (DFG) and Der Wissenschaftsfonds (FWF). The workshop took place online on four consecutive Fridays in March 2021. It brought together contributors who discussed the role of the concept of the virtual in theoretical as well as experimental activities, and investigated into the origins of the terminology of the virtual as it was applied to the various disciplines of natural science. Dealing with historical, philosophical, but also methodological questions, the presentations covered a wide time range, from the Middle Ages to the present day. While physics naturally emerged as the dominant field, natural philosophy, computer science and biology were also addressed. The papers in this volume were contributed by participants in this workshop and approach the subject from different angles. [End Page 264]First, Friedrich Steinle provides us with an introductory piece that reflects on the specific meaning of the use of the term ‘virtual’ in science. He highlights and... (shrink)

This paper connects recent findings from experimental epistemology to several major themes in classical Indian epistemology. First, current evidence supports a specific account of the ordinary knowledge concept in contemporary anglophone American culture. According to this account, known as abilism, knowledge is a true representation produced by cognitive ability. I present evidence that abilism closely approximates Nyāya epistemology’s theory of knowledge, especially that found in the Nyāya-sūtra. Second, Americans are more willing to attribute knowledge of positive facts than (...) of negative facts, especially when such facts are inferred and even when the positive and negative “facts” are logically equivalent. Similar suspicions about knowledge of negative facts seemingly occur in classical Indian epistemology, suggesting that the asymmetry might not be an American quirk but instead reflect a cross-culturally robust tendency in knowledge attributions. Each of these themes—abilism and the positive/negative asymmetry—presents an exciting opportunity for further research in experimental cross-cultural epistemology. (shrink)

Classical symbolic computational models of cognition are at variance with the empirical findings in the cognitive psychology of memory and inference. Standard symbolic computers are well suited to remembering arbitrary lists of symbols and performing logical inferences. In contrast, human performance on such tasks is extremely limited. Standard models donot easily capture content addressable memory or context sensitive defeasible inference, which are natural and effortless for people. We argue that Connectionism provides a more natural framework in which to model (...) this behaviour. In addition to capturing the gross human performance profile, Connectionist systems seem well suited to accounting for the systematic patterns of errors observed in the human data. We take these arguments to counter Fodor and Pylyshyn's (1988) recent claim that Connectionism is, in principle, irrelevant to psychology. (shrink)

Alternative theories to quantum mechanics motivate important fundamental tests of our understanding and descriptions of the smallest physical systems. Here, using spontaneous parametric downconversion as a heralded single-photon source, we place experimental limits on a class of alternative theories, consisting of classical field theories which result in power-dependent normalized correlation functions. In addition, we compare our results with standard quantum mechanical interpretations of our spontaneous parametric downconversion source over an order of magnitude in intensity. Our data match the (...) quantum mechanical expectations, and do not show a statistically significant dependence on power, limiting quantum mechanics alternatives which require power-dependent autocorrelation functions. (shrink)

According to the so-called Quantum Darwinist approach, the emergence of “classical islands” from a quantum background is assumed to obey a principle of maximal information. We illustrate this idea by considering the coupling of two oscillators. As our approach suggests that the classical limit could have emerged throughout a long and progressive Evolution mechanism, it is likely that primitive living organisms behave in a “more quantum”, “less classical” way than more evolved ones. This brings us to seriously (...) consider the possibility to measure departures from classicality exhibited by biological systems. We describe an experimental proposal the aimed at revealing the presence of entanglement in the biophotonic radiation emitted by biological sources. (shrink)

In the 1950s, embryology in socialist China underwent a series of changes that adjusted the disciplinary apparatus to suit socialism and the national goal of self-reliance. As the Communist state called on scientists to learn from the Soviets, embryologists’ comprehensive view on heredity, which did not contradict Trofim Lysenko ’s doctrines, provided a space for them to advance their discipline. Leading scientists, often trained abroad in the tradition of experimental embryology, rode on the tides of Maoist ideology (...) and repositioned their research. Some of their creative realignment of previous research questions, materials, and traditions to Marxist philosophy and agricultural objectives generated productive programs. In particular, Tong Dizhou translated Engels’s dialectics of nature into a research question about cytoplasmic inheritance. His continuing investigation on it led to the first goldfish “clone” through a nuclear transplantation experiment; Zhu Xi and his associates transferred a goldfish model in embryology into studies on improving carp aquaculture, leading to a rare success in the Great Leap Forward of 1958. These directions for embryology continued well into the 1960s. At a time when global embryology was diversifying and began to be molecularized, eventually forming “developmental biology,” socialist embryology took shape in China with a different set of epistemic and practical commitments. The history of its development challenges and enriches our understanding of the concrete process of change in one discipline under Mao, showing ways in which scientists creatively adapted state-sanctioned ideologies and visions to do productive work outside the framework of molecular biology during the Cold War. (shrink)

In this paper I have not, of course, presented all the embryological data that can be collected from the Talmudic and Midrashic literature. More details can be found in Julius Preuss' classical work on biblical and talmudic medicine, now available in Fred Rosner's English translation and in a French M.D. thesis by Martine Michel.75 I also did not present any data on teratology, and did not deal with the very rich Jewish mystical lore, the Cabbala. But a few comments (...) are in order here about the material on embryology.There are very few original ideas in the Talmudic corpus on embryology, but it is obvious that the Sages were well aware of the Greek and Roman theories on embryology.The fact that the Talmud is a compilation that was built up slowly, during several centuries, explains why the information recorded in it cannot be ascribed solely to one school of thought or one clear-cut influence.When a definite problem was difficult to solve because there were many different theories about it, the Sages based their opinion on a famous experiment that seemed to offer guarantees of validity. This was the case with the controversial problem of the formation of the embryo and its sexual differentiation, where the Sages made use of an experiment allegedly initiated by Cleopatra.The Sages were ready to discuss scientific problems with non-Jewish scholars and even to accept their arguments. This was the case with the important topic of the time of the entry of the soul into the embryo. But the legal conclusions drawn from the Sages' opinion were not consistent with those declared by Churth Fathers such as Tertullian. Embryotomy, for instance, was permitted by Jewish law.Wide interest, scholarly discussions, suggestive descriptions and readiness to inquire and to obtain detailed information characterized the Talmudic discussions of embryology.In conclusion, I quote a Talmudic text that reviews the whole process of embryological development through the sequence of prayers of a faithful Jew who learns that his wife is expecting a baby.The first three days, [he should pray to the Lord] that the seed should not putrefy.From the third to the fortieth day: that the child should be a male.From the fortieth day to the third month: that there should not occur any superfetation, which could lead the first embryo to be a fetus compressus.From the third to the sixth month: that an abortion should not occur.From the sixth to the ninth month: that the birth should be without problems.76. (shrink)

The problem of generation has been, for Kant scholars, a kind of test of Kant's successive concepts of finality. Although he deplores the absence of a naturalistic account of purposiveness (and hence of reproduction) in his pre-critical writings, in the First Critique he nevertheless presents a "reductionist" view of finality in the Transcendental Dialectic's Appendices. This finality can be used only as a language, extended to the whole of nature, but which must be filled with mechanistic explanations. Therefore, in 1781, (...) mechanism and teleology are synonymous languages. Despite the differences between its two authors, the Wolffian embryology, exposed in the Theorie der Generation (1764), and debated by Blumenbach's dissertation on Bildungstrieb, enabled Kant to resolve the philosophical problem of natural generation, and subsequently to determine what is proper to the explanation of living processes. Thus, in the Third Critique he could give another account of purposiveness, restricted to the organism, and more realistic than his former one; this philosophical reappraisal of purposiveness in embryology required the new concept of "simply reflexive judgement", and the correlated notion of "regulative principle". Thus framed, this naturalized teleology provided some answers to the Kantian problem of order and contingency after the end of classical (Leibnizian) metaphysics. (shrink)

The extent of the dependence of early Greek cosmogony on mythical conceptions has long been a prolific source of controversy. Views on the subject have varied from Professor Cornford's claim that ‘there is a real continuity between the earliest rational speculation and the religious representation that lay behind it’ to Professor Burnet's extreme statement, ‘it is quite wrong to look for the origins of Ionian science in mythological ideas of any kind.’ The solution of the problem that I wish to (...) suggest is one which should satisfy those who insist on ‘the scientific character of the early Greek cosmology,’ while retaining a direct connection with pre-scientific beliefs—namely, that some, at least, of the earliest philosophers founded their doctrines of the beginning of the universe on a deliberate rationalization of earlier and contemporary mythical ideas. The appearance of notions like the ‘world-egg’ in a number of passages, too well known for quotation, shows that primitive cosmogony assumed an analogy between the generation of the world and the generation of animate creatures. I believe it can be proved that, so far from the ‘renunciation of sexual imagery’ which even Professor Cornford has recently attributed to Anaximander, he and other philosophers retained the habit of regarding cosmogony and anthropogony as parallel phenomena, only substituting for the mythical ‘world-egg’ a more scientific view of the embryo and its development. They looked at the world through the same spectacles as their predecessors, but after wiping from them the rose tint of mythological fancy. (shrink)

This paper provides new tools for philosophical argument analysis and fresh empirical foundations for ‘critical’ ordinary language philosophy. Language comprehension routinely involves stereotypical inferences with contextual defeaters. J.L. Austin’s Sense and Sensibilia first mooted the idea that contextually inappropriate stereotypical inferences from verbal case-descriptions drive some philosophical paradoxes; these engender philosophical problems that can be resolved by exposing the underlying fallacies. We build on psycholinguistic research on salience effects to explain when and why even perfectly competent speakers cannot help making (...) stereotypical inferences which are contextually inappropriate. We analyse a classical paradox about perception, suggest it relies on contextually inappropriate stereotypical inferences from appearance-verbs, and show that the conditions we identified as leading to contextually inappropriate stereotypical inferences are met in formulations of the paradox. Three experiments use a forced-choice plausibility-ranking task to document the predicted inappropriate inferences, in English, German, and Japanese. The cross-linguistic study allows us to assess the wider relevance of the proposed analysis. Our findings open up new perspectives for ‘evidential’ experimental philosophy. (shrink)

While Classical Logic (CL) used to be the gold standard for evaluating the rationality of human reasoning, certain non-theorems of CL—like Aristotle’s and Boethius’ theses—appear intuitively rational and plausible. Connexive logics have been developed to capture the underlying intuition that conditionals whose antecedents contradict their consequents, should be false. We present results of two experiments (total n = 72), the first to investigate connexive principles and related formulae systematically. Our data suggest that connexive logics provide more plausible rationality frameworks (...) for human reasoning compared to CL. Moreover, we experimentally investigate two approaches for validating connexive principles within the framework of coherence-based probability logic (Pfeifer & Sanfilippo, 2021). Overall, we observed good agreement between our predictions and the data, but especially for Approach 2. (shrink)

The situational context within which an activity takes place, as well as the personality characteristics of individuals shape the types of strategies people choose in order to regulate their emotions, especially when confronted with challenging or undesirable situations. Taking self-regulation as the framework to study emotions in relation to learning and performing chamber music canon repertoire, this quasi-experimental and intra-individual study focused on the self-rated emotional states of a professional classical cellist during long-term sustained practice across 100-weeks. This (...) helped to develop greater awareness of different emotions and how they vary over artistic events (9 profiled concerts and 1 commercially recorded album). Data analysis included traditional psychometric measurements to test the internal consistency of the time series data as well as the relationship between variables (artistic events). The study mapped the cellist’s flexible regulation of 17 different positive and negative emotions empirically linked to learning and achievement while practicing within the social context of performing music publicly at a high level. Findings arising from the study help with understandings of how to support musicians to maximize their artistic potential by reducing emotion dysregulation and strengthening the types of adaptive methods that enable them to manage their own emotions. (shrink)

In a poem setting forth the way things are in nature, it is fitting for Lucretius to address, among many other phenomena, human conception and embryonic determination. With an eye toward ethics, Lucretius demonstrates how sexual reproduction at the seminal level can be explained by Epicurean atomism. In this paper, I am concerned with the biological ‘how’ of conception as explained inDe Rerum Natura(=DRN) but also with the ethical ‘therefore’ for Lucretius’ readership and (over)estimations of male autonomy. For modern audiences (...) with a basic grasp of procreation that includes sperm supplied by a male and egg supplied by a female, encountering Lucretius’ verses on women contributing semen (semina) to the process of conception can be surprising (4.1209–62). The idea of female semen may give us pause as we calibrate it with our understanding of eggs and ovulation, but Lucretius, in his time, was not advancing some novel theory. Wading into established debates on male-only or joint male-female semen production and gendered insemination (that is, who produces semen and whose semen is active at conception), Lucretius sides with those promulgating mutuality for both questions (for example Democritus [DK 24 A13]) and rejects Aristotle's representative exclusivist claim of male activity vs female passivity (τὸ ἄρρεν ἐστὶν ὡς κινοῦν καὶ ποιοῦν, τὸ δὲ θῆλυ ὡς παθητικόν,Gen. an.729a28–30; cf. 726a30–6). That is to say, a sexually mature female, like her male counterpart, emits semen that has determining potency in the formation of a human embryo (Lucr. 4.1209–62). Although the discharge and activity of female semen is the focus of this paper, my investigation is not aQuellenforschungor historical survey of Greco-Roman ideas about women's contributions to insemination and fertility, since others have treated these matters extensively. I concentrate rather on how Lucretius employs the concept of female semen in terms of his poetics in Book 4 and what I see as an ethical argument against the domineering nature of Roman masculinity. The problem of female semen, from the point of view of Lucretius’ Roman male audience, is that it is potentially costly to men because it rivals and threatens their status from the physiological to the discursive level. Iain Lonie broaches the same issue from Greek perspectives. (shrink)

The Plymouth Laboratory of the Marine Biological Association of the United Kingdom (1884) was founded in 1888. In addition to conducting morphological and other biological research, the founders of the laboratory aimed at promoting research in experimental zoology which will be used in this paper as a synonym for e. g. experimental embryology, comparative physiology or general physiology. This dream was not fully realized until 1920. The Great War and its immediate aftermath had a positive impact on (...) the development of the Plymouth Laboratory. The war greatly upset the operation of the Zoological Station in Naples and the ensuing crisis in its operations was closely related to the establishment of the physiological department in Plymouth in 1920. Two other key factors in the Plymouth story were the establishment of the Development Fund in 1909, which began contributing funds to the Plymouth Laboratory in 1912, and the patronage of the Cambridge zoologist George P. Bidder (1863-1954). This paper will focus on the combined influence of the Development Fund and Bidder on the development of the Plymouth Laboratory from around 1902 through the early 1920s, and the important role the laboratory played in promoting experimental zoology in Britain in the 1920s. (shrink)

The classical relativistic theory is developed of electric and magnetic fields in terms of boost and rotation generators, respectively, of the Lorentz group of space-time. This development shows that Minkowski geometry requires that there be threestates of polarization of radiation in free space. The magnetic components in a circular basis are right and left circular and longitudinal. The longitudinal component is real and physical, and proportional to one of the three, nonzero, rotation generators of the Lorentz group. The longitudinal (...) electric component is pure imaginary, and proportional to one of the three boost generators. These theoretical arguments conform with experimental data from the Planck radiation law and from magnetic effects of light such as the inverse Faraday effect. (shrink)

An eleventh-century manuscript in the Biblioteca Laurenziana in Florence preserves a short excerpt of a calendar outlining stages in the development of the foetus. It is headed Δαμναστού έκ τού Περί κυουσών καί βρεΦών θεραπείας, ‘Damnastes, from On the Care of Pregnant Women and of Infants’. Though its existence has long been noted, it has not been previously edited or published.

During the past decade, M.W. Evans and his coworkers have been developing so-called “Evans” or “ECE theory” that intends to serve as an unified field theory. One of its predictions is an existence of a radiation magnetic field called a “B(3)-field” which should accompany a circularly polarized electromagnetic radiation. This field should affect free electrons in two ways: (1) the electrons should behave in the B(3)-field in the same way as in a classical magnetic field (i.e., Larmor precession) and (...) moreover, (2) the electrons should undergo quantum interaction with the B(3)-field with the formation of a spin connection resonance. This paper presents an experimental test of the B(3)-field existence by observing the changes in trajectories of free electrons in special detector, when strong (up to 200 W/m2) continuous circularly polarized microwave radiation of a frequency of 2.45 GHz is applied. We have not detected any sign of B(3)-field in presented experiment. It follows that if the B(3)-field really exists, it should be at least 4 orders of magnitude smaller than the Evans’ theory predicts. (shrink)

In this article, I argue that it is wrong to conduct any experiment on a nonhuman which we would regard as immoral were it to be conducted on a human, because such experimentation violates the basic moral rights of sentient beings. After distinguishing the rights approach from the utilitarian approach, I delineate basic concepts. I then raise the classic “argument from marginal cases” against those who support experimentation on nonhumans but not on humans. After next replying to six important objections (...) against that argument, I contend that moral agents are logically required to accord basic moral rights to every sentient being. I conclude by providing criteria for distinguishing ethical from unethical experimentation. (shrink)

The historical reconstruction of the origins of the Neutral Theory of Molecular Evolution (NTME) has been seen purely as an extension of a long-held theoretical debate between the classical and balance schools of Population Genetics. In this perspective, the NTME is but a different interpretation of the then recently published data on high intrapopulation genetic variability. In this paper we try to show that this thesis is deficient and partially incorrect. We show that the sources for the construction and (...) development of the NTME are more varied than this traditional account. We support the Dietrich Historical Thesis, which is the view that different versions of the NTME (Kimura, and King and Jukes) show different kinds of experimental and theoretical support and coincide in recognizing the importance of the then new molecular experimental approach and of its comparative results in evolutionary biology. We stress this case to show the limits of the traditional approach in history and philosophy of science that emphasizes the theoretical activities of scientists and the theoretical characterization of disciplines. (shrink)

Experimental Essays on Zhuangzi is a classic in the field. Originally published in 1983, this edition makes it available again in an expanded version, with four additional contributions, and in an updated format, with pinyin transcription, Chinese characters embedded in the text, and reference style notes. The work is a well respected textbook and essential reader in Daoist thought. It continues to constitute an essential contribution to the study of Daoism and Chinese philosophy.

This paper starts out from the proposition that case-based decision theory is an appropriate tool to explain human decision behavior in situations of structural ignorance. Although the developers of CBDT suggest its reality adequacy, CBDT has not yet been tested empirically very often, especially not in repetitive decision situations. Therefore, our main objective is to analyse the decision behavior of subjects in a repeated-choice experiment by comparing the explanation power of CBDT to reinforcement learning and to classical decision criteria (...) under uncertainty namely maximin, maximax, and pessimism-optimism. Our findings substantiate a predominant significantly higher validity of CBDT compared to the classical criteria and to reinforcement learning. For this reason, the experimental results confirm the suggested reality adequacy of CBDT in repetitive decision situations of structural ignorance. (shrink)

Experimental research is commonly held up as the paradigm of "good" science. Although experiment plays many roles in science, its classical role is testing hypotheses in controlled laboratory settings. Historical science is sometimes held to be inferior on the grounds that its hypothesis cannot be tested by controlled laboratory experiments. Using contemporary examples from diverse scientific disciplines, this paper explores differences in practice between historical and experimental research vis-à-vis the testing of hypotheses. It rejects the claim that (...) historical research is epistemically inferior. For as I argue, scientists engage in two very different patterns of evidential reasoning and, although there is overlap, one pattern predominates in historical research and the other pattern predominates in classical experimental research. I show that these different patterns of reasoning are grounded in an objective and remarkably pervasive time asymmetry of nature. (shrink)

This paper considers a key point of contention between classical and Bayesian statistics that is brought to the fore when examining so-called ‘persistent experimenters’—the issue of stopping rules, or more accurately, outcome spaces, and their influence on statistical analysis. First, a working definition of classical and Bayesian statistical tests is given, which makes clear that (1) once an experimental outcome is recorded, other possible outcomes matter only for classical inference, and (2) full outcome spaces are nevertheless (...) relevant to both the classical and Bayesian approaches, when it comes to planning/choosing a test. The latter point is shown to have important repercussions. Here we argue that it undermines what Bayesians may admit to be a compelling argument against their approach—the Bayesian indifference to persistent experimenters and their optional stopping rules. We acknowledge the prima facie appeal of the pro-classical ‘optional stopping intuition’, even for those who ordinarily have Bayesian sympathies. The final section of the paper, however, provides three error theories that may assist a Bayesian in explaining away the apparent anomaly in their reasoning. (shrink)

The cliché of the clergymen or the religious scholars battling against modern science oversimplifies the history of the encounter between modern science and religion, especially in the case of non-Western societies. Many religious scholars, Muslim and Christian, not only did not oppose modern science but used it instrumentally to propagate their religions. Marwa Elshakry, in her brilliant study of Darwin's opinions among the Arab World, concentrates more on Arab Christians and Sunni Muslims rather than on Shiite Muslims. Muḥammad-Riḍā Iṣfahānī, a (...) Shiite clergyman educated in Islamic theology in Najaf, composed A Critique of Darwin's Philosophy in 1912 as a review of the theory of evolution. However, even before the publication of this book, controversy concerning this topic had been raging in the Arab World for decades. Under the influence of Muslim scholars (Sunni and Shiite) to reconcile modern science with Islam, Iṣfahānī did his best to gather knowledge of modern biology. He applied his self-taught knowledge of modern biology to find new solutions to the difficulties of establishing a dialogue between Islam and modern science. Thanks to the rationalism of his premodern scientific education, Iṣfahānī was more sympathetic towards science than many of his Arab counterparts and able to deeply engage in these debates. Iṣfahānī believed that the theory of evolution in nonhumans did not contradict Islamic discourse nor experimental and rational facts. Nevertheless, he denied the theory of human evolution as a nonscientific hypothesis. He justified his opinion through a detailed refutation of Darwin's heuristic evidence for human evolution in the first chapter of Descent of Man, such as the similarities between anatomy, embryology, and vestigial organs in humans and other animals. He also referred to other Western evolutionists of his time, such as Alfred Russel Wallace and Rudolf Virchow, who also rejected human evolution, and added some other scientific refutations of his own. Undoubtedly, Iṣfahānī's final aim was to demonstrate the possibility of reconciliation between religion in general, and Islam in particular, with modern science. This article provides a detailed consideration of Iṣfahānī's opinions, identifying his Arabic sources and comparing them to the original non-Arabic sources. I also examine the scientific details of Iṣfahānī's achievements and the roots of his misunderstandings. (shrink)

Classical electron theory with classical electromagnetic zero-point radiation (stochastic electrodynamics) is the classical theory which most closely approximates quantum electrodynamics. Indeed, in inertial frames, there is a general connection between classical field theories with classical zero-point radiation and quantum field theories. However, this connection does not extend to noninertial frames where the time parameter is not a geodesic coordinate. Quantum field theory applies the canonical quantization procedure (depending on the local time coordinate) to a mirror-walled (...) box, and, in general, each non-inertial coordinate frame has its own vacuum state. In particular, there is a distinction between the “Minkowski vacuum” for a box at rest in an inertial frame and a “Rindler vacuum” for an accelerating box which has fixed spatial coordinates in an (accelerating) Rindler frame. In complete contrast, the spectrum of random classical zero-point radiation is based upon symmetry principles of relativistic spacetime; in empty space, the correlation functions depend upon only the geodesic separations (and their coordinate derivatives) between the spacetime points. The behavior of classical zero-point radiation in a noninertial frame is found by tensor transformations and still depends only upon the geodesic separations, now expressed in the non-inertial coordinates. It makes no difference whether a box of classical zero-point radiation is gradually or suddenly set into uniform acceleration; the radiation in the interior retains the same correlation function except for small end-point (Casimir) corrections. Thus in classical theory where zero-point radiation is defined in terms of geodesic separations, there is nothing physically comparable to the quantum distinction between the Minkowski and Rindler vacuum states. It is also noted that relativistic classical systems with internal potential energy must be spatially extended and can not be point systems. The classical analysis gives no grounds for the “heating effects of acceleration through the vacuum” which appear in the literature of quantum field theory. Thus this distinction provides (in principle) an experimental test to distinguish the two theories. (shrink)

Fourteen of the American philosopher's most influential essays appear here, offering profound reflections on many different aspects of knowledge, reality, and epistemology. These papers on experimental logic are rooted in the implication that possession of knowledge implies a judgment, resulting from an inquiry or investigation. The presence of this "inquiry stage" suggests an intermediate and mediating phase between the external world and knowledge, an area conditioned by other factors. Expanding upon this basis, these essays consider the relationship of thought (...) and its subject matter; the antecedents and stimuli of thought, data, and meanings; the objects of thought; control of ideas by facts; and similar topics. Unabridged republication of the classic 1916 edition. (shrink)

Although theoretical results for several algorithms in many application domains were presented during the last decades, not all algorithms can be analyzed fully theoretically. Experimentation is necessary. The analysis of algorithms should follow the same principles and standards of other empirical sciences. This article focuses on stochastic search algorithms, such as evolutionary algorithms or particle swarm optimization. Stochastic search algorithms tackle hard real-world optimization problems, e.g., problems from chemical engineering, airfoil optimization, or bioinformatics, where classical methods from mathematical optimization (...) fail. Nowadays statistical tools that are able to cope with problems like small sample sizes, non-normal distributions, noisy results, etc. are developed for the analysis of algorithms. Although there are adequate tools to discuss the statistical significance of experimental data, statistical significance is not scientifically meaningful per se. It is necessary to bridge the gap between the statistical significance of an experimental result and its scientific meaning. We will propose some ideas on how to accomplish this task based on Mayo's learning model. (shrink)

The extended Church-Turing thesis posits that any computable function can be calculated efficiently by a probabilistic Turing machine. If this thesis held true, the global effort to build quantum computers might ultimately be unnecessary. The thesis would however be strongly contradicted by a physical device that efficiently performs a task believed to be intractable for classical computers. BosonSampling - the sampling from a distribution of n photons undergoing some linear-optical process - is a recently developed, and experimentally accessible example (...) of such a task [1]. (shrink)

Although there is good experimental evidence for the Aharonov–Bohm phase shift occurring when a solenoid is placed between the beams forming a double-slit electron interference pattern, there has been very little analysis of the relevant classical electromagnetic forces. These forces between a point charge and a solenoid involve subtle relativistic effects of order v 2 /c 2 analogous to those discussed by Coleman and Van Vleck in their treatment of the Shockley–James paradox. In this article we show that (...) a treatment exactly analogous to that given by Coleman and Van Vleck predicts classical electromagnetic forces which provide the basis for the Aharonov–Bohm phase shift. The magnetic force on the solenoid due to the passing charge leads to a displacement of the solenoid center of energy which must be balanced by the displacement of the passing charge. This classical displacement of the passing charge is exactly what is required to account for the Aharonov–Bohm phase shift. Also, we discuss a magnetic moment model which appears frequently in the literature and note that although the model provides conservation of linear momentum, it does not satisfy the general requirements for relativistic theories. We give an example suggesting that the new equation of motion for a magnetic moment proposed by Aharonov, Pearle, and Vaidman based upon the hidden momentum of the magnetic moment is completely inappropriate. Finally, we emphasize that the Aharonov–Casher phase shift is also explained by classical electromagnetic forces exactly parallel to those explaining the Aharonov–Bohm phase shift. (shrink)